ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials

Clinical trials are mandatory protocols describing medical research on humans and among the most valuable sources of medical practice evidence. Searching for trials relevant to some query is laborious due to the immense number of existing protocols. Apart from search, writing new trials includes composing detailed eligibility criteria, which might be time-consuming, especially for new researchers. In this paper we present ASCOT, an efficient search application customised for clinical trials. ASCOT uses text mining and data mining methods to enrich clinical trials with metadata, that in turn serve as effective tools to narrow down search. In addition, ASCOT integrates a component for recommending eligibility criteria based on a set of selected protocols

Natural language analysis of online health forums

Despite advances in concept extraction from free text, finding meaningful health related information from online patient forums still poses a significant challenge. Here we demonstrate how structured information can be extracted from posts found in such online health related forums by forming relationships between a drug/treatment and a symptom or side effect, including the polarity/sentiment of the patient. In particular, a rule-based natural language processing (NLP) system is deployed, where information in sentences is linked together though anaphora resolution. Our NLP relationship extraction system provides a strong baseline, achieving an F1 score of over 80% in discovering the said relationships that are present in the posts we analysed

OSSMETER: Automated measurement and analysis of open source software

International audienceDeciding whether an open source software (OSS) meets the requiredstandards for adoption in terms of quality, maturity, activity of development anduser support is not a straightforward process. It involves analysing various sourcesof information, including the project’s source code repositories, communicationchannels, and bug tracking systems. OSSMETER extends state-of-the-art techniquesin the field of automated analysis and measurement of open-source software(OSS), and develops a platform that supports decision makers in the processof discovering, comparing, assessing and monitoring the health, quality, impactand activity of opensource software. To achieve this, OSSMETER computestrustworthy quality indicators by performing advanced analysis and integrationof information from diverse sources including the project metadata, source coderepositories, communication channels and bug tracking systems of OSS projects

Term Extraction

Automatic extraction of metadata from free text is key to digesting stored literature information, especially in dynamic and rapidly evolving fields, such as biomedicine. Besides, more and more applications heavily depend on knowledge and ontologies. Successfully recognizing or extracting terms and their relations in scientific and technical documents without human intervention is crucial to semantically structuring literature and populating ontologies. This task has been recognized as the bottleneck in exploiting fields that involve complex and dynamically changing terms, and thus has become an important research topic in Natural Language Processing. This chapter presents a brief but complete overview of automatic term recognition techniques and discusses a number of crucial practical issues. Subsequently, it focuses on evaluation, discusses available resources, and highlights a number of applications.</p